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bia-mifa-models

Schemas and models for working with the BioImage Archive's MIFA (Metadata, Incentives, Formats and Accessibility) metadata implementation

URI: https://w3id.org/BioImage-Archive/bia-mifa-models

Name: bia-mifa-models

Classes

Class Description
Annotations A set of annotations for an AI-ready dataset
Author Information about the authors
AuthorCollection A holder for Author objects
FileLevelMetadata metadata atributes that must be detailed at the file level
FileLevelMetadataCollection A holder for FileLevelMetadata objects
GrantReference Information about grant ID and funding body that funded the study
GrantReferenceCollection A holder for GrantReference objects
Links Links related to the study
OrganisationInfo Information about the organisation the author is affiliated with
OrganisationInfoCollection A holder for OrganisationInfo objects
Publications Information about any publications associated with the dataset
PublicationsCollection A holder for Publications objects
Study General information about the study
Version Information about the dataset version

Slots

Slot Description
acknowledgements Any people or groups that should be acknowledged as part of the dataset
address Organisation address
ai_models_trained Link to the models that have been trained with this dataset (if any)
annotation_confidence_level Confidence on annotation accuracy
annotation_coverage Which images from the dataset were annotated, and what percentage of the data...
annotation_creation_time Date and time when the annotation was created
annotation_criteria Rules used to generate annotations
annotation_id The identifier for the annotation
annotation_method Description of how the annotations were created
annotation_overview Short descriptive summary indicating the type of annotation and how it was ge...
annotation_type Annotation type, for example class labels, segmentation masks, counts
author_first_name First name for an author
author_last_name Last name for an author
authors a collection of the authors of a study
changes Textual description of changes compared to previous version
description Brief description of the detaset
email Email address of a person
file_metadata a collection of the file level metadata for each annotation
funder The funding body provididing support
funding_statement Description of how the study was funded
grant_id The identifier for the grant
grants a collection of grant ids and funder names associated with the study
keywords Keywords or tags used to describe the dataset
license The license under which the data are available
link_description The description of the linked content
link_url URL of relevant link
orcid_id A unique identifier for an author
organisation a collection of the name and address of organisations authors are affiliated ...
organisation_name Organisation name
previous_version Pointer to previous version
publication_authors Authors of associated publication
publication_doi Digital Object Identifier (DOI)
publication_title The title for a publication associated to the dataset
publication_year Year of publication
publications a collection of publications associated with a study
pubmed_id Identifier for journal articles/abstracts in PubMed
role Role of the author when creating the dataset
ror_id Identifier for the Research Organization Registry
source_image_id identifier of the source image from which the annotation originated
spatial_information Spatial information for non-pixel annotations
timestamp Date and time when the version was created
title The title for your dataset
transformations Any transformations required to link the images to the annotations
version Unique version number

Enumerations

Enumeration Description
AnnotationType
LicenseType

Types

Type Description
Boolean A binary (true or false) value
Curie a compact URI
Date a date (year, month and day) in an idealized calendar
DateOrDatetime Either a date or a datetime
Datetime The combination of a date and time
Decimal A real number with arbitrary precision that conforms to the xsd:decimal speci...
Double A real number that conforms to the xsd:double specification
Float A real number that conforms to the xsd:float specification
Integer An integer
Jsonpath A string encoding a JSON Path
Jsonpointer A string encoding a JSON Pointer
Ncname Prefix part of CURIE
Nodeidentifier A URI, CURIE or BNODE that represents a node in a model
Objectidentifier A URI or CURIE that represents an object in the model
Sparqlpath A string encoding a SPARQL Property Path
String A character string
Time A time object represents a (local) time of day, independent of any particular...
Uri a complete URI
Uriorcurie a URI or a CURIE

Subsets

Subset Description