Class: FileLevelMetadata

metadata atributes that must be detailed at the file level

classDiagram class FileLevelMetadata FileLevelMetadata : annotation_creation_time FileLevelMetadata : annotation_id FileLevelMetadata : annotation_type FileLevelMetadata --> AnnotationType : annotation_type FileLevelMetadata : source_image_id FileLevelMetadata : spatial_information FileLevelMetadata : transformations

Slots

Name	Cardinality and Range	Description	Inheritance
annotation_id	1..1 String	The identifier for the annotation	direct
annotation_type	1..* AnnotationType	Annotation type, for example class labels, segmentation masks, counts	direct
source_image_id	1..1 String	identifier of the source image from which the annotation originated	direct
transformations	0..1 String	Any transformations required to link the images to the annotations	direct
spatial_information	0..1 String	Spatial information for non-pixel annotations	direct
annotation_creation_time	0..1 Datetime	Date and time when the annotation was created	direct

Usages

used by	used in	type	used
FileLevelMetadataCollection	file_metadata	range	FileLevelMetadata
Annotations	file_metadata	range	FileLevelMetadata

Identifier and Mapping Information

Schema Source

from schema: https://w3id.org/BioImage-Archive/bia-mifa-models

Mappings

Mapping Type	Mapped Value
self	bia_mifa_models:FileLevelMetadata
native	bia_mifa_models:FileLevelMetadata

LinkML Source

Direct

name: FileLevelMetadata
description: metadata atributes that must be detailed at the file level
from_schema: https://w3id.org/BioImage-Archive/bia-mifa-models
slots:
- annotation_id
- annotation_type
- source_image_id
- transformations
- spatial_information
- annotation_creation_time

Induced

name: FileLevelMetadata
description: metadata atributes that must be detailed at the file level
from_schema: https://w3id.org/BioImage-Archive/bia-mifa-models
attributes:
  annotation_id:
    name: annotation_id
    description: The identifier for the annotation
    examples:
    - value: AN1
    - value: '12345678'
    from_schema: https://w3id.org/BioImage-Archive/bia-mifa-models
    rank: 1000
    slot_uri: schema:identifier
    identifier: true
    alias: annotation_id
    owner: FileLevelMetadata
    domain_of:
    - FileLevelMetadata
    range: string
    required: true
  annotation_type:
    name: annotation_type
    description: Annotation type, for example class labels, segmentation masks, counts...
    examples:
    - value: '[''segmentation_mask'', ''class_labels'']'
    - value: counts
    from_schema: https://w3id.org/BioImage-Archive/bia-mifa-models
    rank: 1000
    multivalued: true
    alias: annotation_type
    owner: FileLevelMetadata
    domain_of:
    - FileLevelMetadata
    - Annotations
    range: AnnotationType
    required: true
  source_image_id:
    name: source_image_id
    description: identifier of the source image from which the annotation originated
    examples:
    - value: IM1
    - value: '12532806'
    from_schema: https://w3id.org/BioImage-Archive/bia-mifa-models
    rank: 1000
    alias: source_image_id
    owner: FileLevelMetadata
    domain_of:
    - FileLevelMetadata
    range: string
    required: true
  transformations:
    name: transformations
    description: Any transformations required to link the images to the annotations
    examples:
    - value: Rotation_angle = 37°
    - value: Translation_horizontal_pixel_displacement = 150, Translation_vertical_pixel_displacement
        = 92
    from_schema: https://w3id.org/BioImage-Archive/bia-mifa-models
    rank: 1000
    alias: transformations
    owner: FileLevelMetadata
    domain_of:
    - FileLevelMetadata
    range: string
  spatial_information:
    name: spatial_information
    description: Spatial information for non-pixel annotations
    examples:
    - value: The pixels belonging to the mouse embryo related to this cell count are
        provided in the binary mask with annotation id AN1237946
    - value: Each annotated object contains a category_id indicating the annotation
        class label, and an associated bounding box delineating the corresponding
        blod vessel
    from_schema: https://w3id.org/BioImage-Archive/bia-mifa-models
    rank: 1000
    alias: spatial_information
    owner: FileLevelMetadata
    domain_of:
    - FileLevelMetadata
    range: string
  annotation_creation_time:
    name: annotation_creation_time
    description: Date and time when the annotation was created
    examples:
    - value: '2021-04-11T11:00:15-05:00'
    - value: '2017-01-23T18:22:04-00:00'
    from_schema: https://w3id.org/BioImage-Archive/bia-mifa-models
    rank: 1000
    slot_uri: pav:authoredOn
    alias: annotation_creation_time
    owner: FileLevelMetadata
    domain_of:
    - FileLevelMetadata
    range: datetime