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Slot: annotation_method

Description of how the annotations were created. For example, were the annotations crowdsourced or expertly annotated, produced by a human or software, what software was used, when were the annotations created, protocols used for consensus and quality assurance

URI: bia_mifa_models:annotation_method

Applicable Classes

Name Description Modifies Slot
Annotations A set of annotations for an AI-ready dataset no

Properties

  • Range: String

  • Required: True

Examples

Value
A machine learning-based framework was utilized to produce a first coarse annotation of nuclear contours. Then, a disease expert curated all annotations by editing, adding, or removing polygons. Finally, an expert pathologist revised all image annotations and a final version of the annotations was curated.
Cell counts were performed manually by expert biologists. For cases difficult to quantify, a vote including all experts was taken and annotations were corrected according to the majority view.

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/BioImage-Archive/bia-mifa-models

LinkML Source

name: annotation_method
description: Description of how the annotations were created. For example, were the
  annotations crowdsourced or expertly annotated,  produced by  a human or software,
  what software was used, when were the annotations created,  protocols used for consensus
  and quality assurance
examples:
- value: A machine learning-based framework was utilized to produce a first coarse
    annotation of nuclear contours.  Then, a disease expert curated all annotations
    by editing, adding, or removing polygons.  Finally, an expert pathologist revised
    all image annotations and a final version of the annotations was curated.
- value: Cell counts were performed manually by expert biologists. For cases difficult
    to quantify,  a vote including all experts was taken and annotations were corrected
    according to the majority view.
from_schema: https://w3id.org/BioImage-Archive/bia-mifa-models
rank: 1000
alias: annotation_method
domain_of:
- Annotations
range: string
required: true